Ok, this just makes no sense at all. I've set up my mapkeys, saved the options file, they work fine in my part files. The minute I'm in an assembly mode, mapkeys are disabled. That's insane becuase they behave as if I left to work outside my application. But I'm still in Creo, just working with an assembly file. Why would your mapkeys not apply in an assembly mode? Simple stuff like show/hide construction planes, etc?
UPDATE: Ok, I finallly figured out how to fix them. There were multiple config.pro files, one in main PTC directory, others in various project folders whenever they were the working directory, and config.pro became a horrible mess. Creo does not save mapkeys to 1 master file, it kept saving them haphazardly to various config.pro files in differect locations, so hotkeys did not function properly. I got rid of all config.pro files except for 1 in current working directory, and synched up all the correct mapkeys in that and master PTC location file. They now work as expected.
So the request for ProE here is this: Please don't do the "save in session" mapkeys, that makes no sense. Just have 1 master file with mapkeys applicable to all files in all directories.