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Nathan,
One thing the TPI does not mention is to make ALL instances independant. The reason I say this is we have had many assemblies not check out in Intralink 3.4 because one sub-assembly used the stand-alone part and another sub-assembly used an instance. Even if the objects are diferent numbers, Intralink understands the dependencies. If you are using Intralink make sure you up date the family table to exclude the stand-alone model. This will not resolve all issues, but it will reduce them.
Patrick Perry -- BAE Systems