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By "Arbortext", do you mean Arbortext IsoDraw or Arbortext Editor?
Arbortext Editor. This problem was resolved as being an error in ProE. When a Black on White color scheme is selected the background color defaults back to black on CGM output. To solve this a mapkey was written to change all of the System Colors to black and background to white. By setting the colors manually the CGM is output with correct color palette.
Thanks for responding to my question!