The Check in comment on a workflow template are not part of the dataset if you export the workflow to ZIP or JAR file.
In our example we have a chain of 3 systems in order to test and verify if a workflow change is OK.
First we manually create/change the workflow template in our TEST system, during check in of the template we refer to our change management system and issue the change number in the check in comment.
If the change is OK, we export to ZIP and import to PrePROD system for a end user verification. Already on this first export/import the change management number is lost during import.
Last import is done on PROD system, no comment at all since its lost.
It is hard to track changes if this information is not persistent.
Please make the comment part of the export data set and please consider to import a template into checked out status, then maybe a comment can be made manually as last step
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