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If you were currently paying for Intralink 3.X then you didn't really need to pay for an continued support extension to get it to work with WF4. I installed the M060 version of Intralink 3.4 and upgraded to WF4 a few weeks ago and it works fine. AFAsupport after June 30, 09 I think your out of luck for anymore extensions, but unless your having problems with the serveror clients there no need to panic. I am looking at the new CADDBMS software the PTC's offering now called "ProductPoint". It has a lot of the same features of Windchill but not all the overhead. There are demo's available on PTC's website if your interested.
As far as I know, support ends with no option. However, personally I've only used the support during deployments & upgrades. I am not a bit worried about the lack of support. There is always this group!