First of all I want to thank everyone who helped with the issue I was having with starting the DS.
I launch "Apache" and then enter "C:\PTC\Intralink\windchill\tomcat\bin\wttomcat_start.bat" to launch "Tomcat". It takes a moment for anything to start scrolling in the newly opened window, how do I tell when it ready? I assume I need to wait before I launch the MethodServer?
It shouldn't take Tomcat very long to start at all. If you want to test, you could try going to the Windchill homepage before starting Method Server. If you get an error from Tomcat (not Apache) then it's running OK.