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I can't seem to figure out if one can or how to set a dobj's modified state. Namely, I want to set it to unmodified.
Just sharing the answer to my question in case it's useful to someone else. As part of this, it might be useful to note that my dobj reference in this question was to the editor object one uses to inspect the state of an included file.
In short, the answer is: You can't.
Details: PTC Arbortext support has answered this question with the following: Currently, there is no programmatic way to simply mark a given xinclude as "not modified". If a direct programmatic technique was desired to individually clear out the modified state of an xinclude, that would be require an enhancement request.
In case you're interested, here's why I asked the question?