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Hi Sri ,
There are WC API's available to do that . It is good to get this associate / dissocaite done via Queue.
You may have to parse the file to get the Partnumber and the API's would be something like ,
ESITargetUtility.isTargetAssociatied(part, esiTarget);
ESIHelper.service.assignTarget(part, esiTarget);
Regards,
Sriram Rammohan