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Is there a way to set the Assembly Model Tree Display (Settings -> Tree Filters) to have 'Features' and 'Suppressed Objects' checked off as Default? They are currently unchecked as Default.
Settings -> Tree Filters -> check the boxes you want -> OK
Settings -> Save Settings File -> tree.cfg
Tools -> Options -> mdl_tree_cfg_file -> Browse to location where you saved the tree.cfg file -> Add/Change -> Close